Web Server
We provide a concise online analysis website, where you can submit your files, and you only need to wait a few minutes (depending on your internet speed) to get the synteny analysis chart.
If you don't have a test file on hand, you can click submit directly, and we will use our example file to show you. Example files be downloaded here.
If you only have fasta format files, please click the 'Without mummer result' button, we provide a full-process analysis method.
About Parameters
Genome(1,2,3): Input the genome fasta file to obtain the length of each chromosome in the genome(ie genome1 is reference genome, other is query).
Targetchr(1,2,3): Set the number of chromosomes in genome1, this parameter is optional, and its value is determined by the number of chromosomes in the fasta file of the input genome1 by default,or it can be set by users.eg. 12
Mummer(1,2,3): Input the coordinate file for comparing genome1 and genome2/3, if there is no coordinate file, call mummer to compare genome1 and genome2/3 to generate this coordinate file, such as ReferencevsQuery1.delta.filter.coords.