Saccharum Regulatory Networks Database

This is the database for further analysis and visualization of the data generated from "Isoform-level and haplotype-resolved full-length transcriptome revealed the lignin metabolic process in complex polyploid sugarcane cultivars". we sampled multiple tissues from the sugarcane cultivar GT42 during its whole growth period and performed full-length transcriptome sequencing (Iso-seq) and RNA sequencing (RNA-seq) to generate a multi-omics data set of sugarcane gene expression. By integrating these transcriptome datasets, we constructed an Isoform-level and haplotype-resolved full-length transcriptome of sugarcane cultivars, identifying 305,498 unique isoforms from 166,592 haplotype-resolved genes. Systematic homology inference allowed us to assign isoforms and genes to the two recognized ancestral species of sugarcane cultivars, Saccharum officinarum and Saccharum spontaneum, with approximately 31.31% of the genes derived from Saccharum spontaneum. Gene expression atlas and expression regulatory networks were used to elucidate the lignin metabolic process in sugarcane cultivars.

if you used the data from the database, please cite the paper kindly! (https://doi.org/123456/123456)